PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g07240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 235aa    MW: 25707.8 Da    PI: 6.5944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g07240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06123149430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++i +++  L++l+P +
  Vradi04g07240.1 123 NHSLAERARREKISERMRILQDLVPGC 149
                      79***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-8117151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-5117158No hitNo description
PROSITE profilePS508889.267119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-8122156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMELLFTISV SYSSITLSCS HLPMDPPLIS DSTFSSAYTL ADIWLGTTPA FPPSDHHFSK  60
NDSGSNKRMK VEGCSVKNDG FKDEAETSSV SCNKSSEQST MPCEAPKQDY IHVRARRGQA  120
TDNHSLAERA RREKISERMR ILQDLVPGCN KFLSMKLEAV NSRMNMSLNT DGFPLKDVGG  180
TGMVFGSQAA TGYAQGSHPG CLHMQIGGGL REHDSEVSHG NETSFDRFDF LLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-103AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497134.11e-154PREDICTED: transcription factor bHLH79-like isoform X2
TrEMBLA0A0L9UBN81e-146A0A0L9UBN8_PHAAN; Uncharacterized protein
STRINGGLYMA04G34660.15e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-42BIG PETAL P